STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP47Ubiquitin specific peptidase 47. (1377 aa)    
Predicted Functional Partners:
POLB
DNA polymerase beta.
    
 0.972
FBXW11
F-box and WD repeat domain containing 11.
    
 
 0.831
RRP8
Ribosomal RNA processing 8.
      
 0.754
TRIP12
Thyroid hormone receptor interactor 12.
   
  
 0.749
BTRC
Beta-transducin repeat containing E3 ubiquitin protein ligase.
    
 
 0.727
POLL
DNA polymerase lambda.
    
 0.703
PSMD7
Proteasome 26S subunit, non-ATPase 7.
      
 0.646
PLAA
Phospholipase A2 activating protein.
   
  
 0.636
TPD52L1
TPD52 like 1.
      
 0.608
USP13
Ubiquitin specific peptidase 13.
      
 0.603
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.