STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP13Ubiquitin specific peptidase 13. (865 aa)    
Predicted Functional Partners:
USP10
Ubiquitin specific peptidase 10.
     
 0.977
BECN1
Beclin 1.
     
 0.975
UBB
Ubiquitin B.
    
 0.971
SIAH2
Siah E3 ubiquitin protein ligase 2.
    
 0.966
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.961
ENSCWAP00000006692
annotation not available
    
 0.878
RPS27A
Ribosomal protein S27a.
    
 0.878
ENSCWAP00000022461
annotation not available
    
 0.878
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
    
 0.829
UBL4A
Ubiquitin like 4A.
    
 0.828
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.