STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDE6HPhosphodiesterase 6H. (83 aa)    
Predicted Functional Partners:
PDE6C
Phosphodiesterase 6C.
   
 
 0.976
GNAT2
G protein subunit alpha transducin 2.
   
 
 0.975
GUCY2D
Guanylate cyclase 2D, retinal.
     
 0.901
GUK1
Guanylate kinase 1.
   
 
  0.901
CNGB3
Cyclic nucleotide gated channel subunit beta 3.
   
  
 0.896
CNGA3
Cyclic nucleotide gated channel subunit alpha 3.
   
  
 0.876
NPR1
Natriuretic peptide receptor 1.
     
 0.875
NPR2
Natriuretic peptide receptor 2.
     
 0.875
ENSCWAP00000014729
annotation not available
     
 0.871
GUCY2C
Guanylate cyclase 2C.
     
 0.866
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.