STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EBF3EBF transcription factor 3. (596 aa)    
Predicted Functional Partners:
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.767
YOD1
YOD1 deubiquitinase.
    
   0.752
PLAA
Phospholipase A2 activating protein.
    
   0.752
LHX2
LIM homeobox 2.
   
 
 0.675
LHX9
LIM homeobox 9.
   
 
 0.610
PPARG
Peroxisome proliferator activated receptor gamma.
     
 0.573
CEBPB
CCAAT enhancer binding protein beta.
     
 0.565
SPATA5L1
Spermatogenesis associated 5 like 1.
    
 
 0.548
VCP
Valosin containing protein.
    
 
 0.548
SPATA5
Spermatogenesis associated 5.
    
 
 0.548
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.