STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC42Coiled-coil domain containing 42. (316 aa)    
Predicted Functional Partners:
ZBTB1
Zinc finger and BTB domain containing 1.
    
 
 0.652
RNF141
Ring finger protein 141.
      
 0.646
LRRC18
Leucine rich repeat containing 18.
      
 0.646
ODF1
Outer dense fiber of sperm tails 1.
      
 0.635
ENSCWAP00000019777
annotation not available
      
 0.630
ENSCWAP00000010830
annotation not available
      
 0.626
AGFG1
ArfGAP with FG repeats 1.
      
 0.626
PCMTD1
protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1.
      
 0.615
CCDC39
Coiled-coil domain containing 39.
   
  
 0.607
CCDC113
Coiled-coil domain containing 113.
  
  
 0.597
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.