STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL16A1Collagen type XVI alpha 1 chain. (1612 aa)    
Predicted Functional Partners:
COL2A1
Collagen type II alpha 1 chain.
    
0.924
COL5A2
Collagen type V alpha 2 chain.
  
0.919
COL1A1
Collagen type I alpha 1 chain.
   
0.918
COL1A2
Collagen type I alpha 2 chain.
   
0.889
COL11A1
Collagen type XI alpha 1 chain.
   
0.842
COL3A1
Collagen type III alpha 1 chain.
  
0.839
COL6A2
Collagen type VI alpha 2 chain.
   
0.818
COL11A2
Collagen type XI alpha 2 chain.
   
0.809
COL5A3
Collagen type V alpha 3 chain.
  
0.801
COLGALT1
Collagen beta(1-O)galactosyltransferase 1.
   
 0.790
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.