STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNX4Sorting nexin 4. (450 aa)    
Predicted Functional Partners:
SNX7
Sorting nexin 7.
  
 
0.986
SNX30
Sorting nexin family member 30.
  
 
0.980
VPS35
VPS35 retromer complex component.
   
 0.974
SNX5
Sorting nexin 5.
   
 0.974
VAMP8
Vesicle associated membrane protein 8.
    
 0.966
DYNC1I1
Dynein cytoplasmic 1 intermediate chain 1.
    
  0.964
STX16-NPEPL1
STX16-NPEPL1 readthrough (NMD candidate).
    
 0.963
GAK
Cyclin G associated kinase.
    
 0.952
ENSCWAP00000018079
annotation not available
    
 0.952
STX12
Syntaxin 12.
   
 0.947
Your Current Organism:
Catagonus wagneri
NCBI taxonomy Id: 51154
Other names: C. wagneri, Chacoan peccary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.