STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CFPG_044Conserved hypothetical protein. (252 aa)    
Predicted Functional Partners:
CFPG_045
Conserved hypothetical protein; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
  
  
 0.794
lspA
Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
  
     0.692
CFPG_573
Outer membrane protein assembly factor YaeT.
  
     0.680
CFPG_354
Signal peptidase I; Belongs to the peptidase S26 family.
  
     0.641
CFPG_147
Conserved hypothetical protein.
 
     0.621
rpsU
30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
 
     0.604
CFPG_554
Conserved hypothetical protein.
  
     0.598
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
       0.574
CFPG_755
Conserved hypothetical protein.
  
     0.567
CFPG_375
Conserved hypothetical protein.
  
     0.545
Your Current Organism:
Azobacteroides pseudotrichonymphae
NCBI taxonomy Id: 511995
Other names: C. Azobacteroides pseudotrichonymphae genomovar. CFP2, Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2
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