Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CFPG_114Conserved hypothetical protein. (199 aa)    
Predicted Functional Partners:
CFPG_117
Conserved hypothetical protein.
 
     0.739
CFPG_115
Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
  
    0.720
ddl
D-alanine-D-alanine ligase; Cell wall formation.
     
 0.716
CFPG_214
Putative cell division protein FtsQ.
 
  
 0.715
CFPG_574
OmpH-like outer membrane protein.
  
     0.700
CFPG_250
Conserved hypothetical protein.
  
     0.683
CFPG_049
Conserved hypothetical protein; Belongs to the P-Pant transferase superfamily.
  
     0.648
nadE
Glutamine-dependent amidohydrolase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
       0.629
CFPG_146
Conserved hypothetical protein.
 
     0.628
rpmH
50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
     
 0.617
Your Current Organism:
Azobacteroides pseudotrichonymphae
NCBI taxonomy Id: 511995
Other names: C. Azobacteroides pseudotrichonymphae genomovar. CFP2, Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2
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