Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CFPG_183Conserved hypothetical protein. (580 aa)    
Predicted Functional Partners:
CFPG_181
M23 family peptidase.
 
 
   0.933
CFPG_182
Conserved hypothetical protein.
 
    0.856
CFPG_043
Conserved hypothetical protein.
 
 
 
 0.779
dut
dUTP pyrophosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
  
    0.750
CFPG_319
Putative peptidyl-prolyl cis-trans isomerase.
 
   
 0.717
CFPG_561
Peptidyl-prolyl cis-trans isomerase SurA.
 
   
 0.570
CFPG_746
Putative protease.
  
     0.559
CFPG_361
Carboxyl-terminal processing protease; Belongs to the peptidase S41A family.
  
   0.525
rpmC
50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
     0.486
CFPG_728
Dipeptidyl-peptidase III.
 
 
 
 0.486
Your Current Organism:
Azobacteroides pseudotrichonymphae
NCBI taxonomy Id: 511995
Other names: C. Azobacteroides pseudotrichonymphae genomovar. CFP2, Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2
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