Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CFPG_213Alpha-amylase. (546 aa)    
Predicted Functional Partners:
CFPG_621
Putative amino acid transporter.
   
 0.912
CFPG_416
1,4-alpha-glucan branching enzyme.
 
  
 0.611
CFPG_736
Glycogen synthase-related protein.
  
  
 0.560
CFPG_662
Glycogen synthase.
  
 
 
 0.530
CFPG_312
Glutamate synthase large subunit.
  
  
 0.515
CFPG_615
Putative glucosamine-6-phosphate isomerase.
 
  
 0.487
CFPG_444
Putative 4-alpha-glucanotransferase.
 
  
 0.460
CFPG_661
Glycogen phosphorylase.
  
 
 0.457
Your Current Organism:
Azobacteroides pseudotrichonymphae
NCBI taxonomy Id: 511995
Other names: C. Azobacteroides pseudotrichonymphae genomovar. CFP2, Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2
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