CFPG_237 protein (Azobacteroides pseudotrichonymphae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CFPG_237

Inorganic phosphate transporter. (334 aa)

Predicted Functional Partners:

CFPG_236

0.974

CFPG_238

0.686

CFPG_239

0.686

CFPG_312

0.471

CFPG_278

0.464

uxaC

0.447

hisI

0.430

lysS

0.410

CFPG_273

0.406

Your Current Organism:

Azobacteroides pseudotrichonymphae

NCBI taxonomy Id: 511995
Other names: C. Azobacteroides pseudotrichonymphae genomovar. CFP2, Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CFPG_236	CFPG_237	CFPG_236	CFPG_237	Putative pit accessory protein.	Inorganic phosphate transporter.	0.974
CFPG_236	CFPG_238	CFPG_236	CFPG_238	Putative pit accessory protein.	Heterodisulfide reductase subunit C.	0.510
CFPG_236	CFPG_239	CFPG_236	CFPG_239	Putative pit accessory protein.	Heterodisulfide reductase subunit B.	0.510
CFPG_236	uxaC	CFPG_236	CFPG_235	Putative pit accessory protein.	Glucuronate isomerase.	0.588
CFPG_237	CFPG_236	CFPG_237	CFPG_236	Inorganic phosphate transporter.	Putative pit accessory protein.	0.974
CFPG_237	CFPG_238	CFPG_237	CFPG_238	Inorganic phosphate transporter.	Heterodisulfide reductase subunit C.	0.686
CFPG_237	CFPG_239	CFPG_237	CFPG_239	Inorganic phosphate transporter.	Heterodisulfide reductase subunit B.	0.686
CFPG_237	CFPG_273	CFPG_237	CFPG_273	Inorganic phosphate transporter.	Ferredoxin-nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	0.406
CFPG_237	CFPG_278	CFPG_237	CFPG_278	Inorganic phosphate transporter.	Hydroxymethylbilane synthase/uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase.	0.464
CFPG_237	CFPG_312	CFPG_237	CFPG_312	Inorganic phosphate transporter.	Glutamate synthase large subunit.	0.471
CFPG_237	hisI	CFPG_237	CFPG_456	Inorganic phosphate transporter.	phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase; In the N-terminal section; belongs to the PRA-CH family.	0.430
CFPG_237	lysS	CFPG_237	CFPG_626	Inorganic phosphate transporter.	lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.	0.410
CFPG_237	uxaC	CFPG_237	CFPG_235	Inorganic phosphate transporter.	Glucuronate isomerase.	0.447
CFPG_238	CFPG_236	CFPG_238	CFPG_236	Heterodisulfide reductase subunit C.	Putative pit accessory protein.	0.510
CFPG_238	CFPG_237	CFPG_238	CFPG_237	Heterodisulfide reductase subunit C.	Inorganic phosphate transporter.	0.686
CFPG_238	CFPG_239	CFPG_238	CFPG_239	Heterodisulfide reductase subunit C.	Heterodisulfide reductase subunit B.	0.999
CFPG_238	uxaC	CFPG_238	CFPG_235	Heterodisulfide reductase subunit C.	Glucuronate isomerase.	0.401
CFPG_239	CFPG_236	CFPG_239	CFPG_236	Heterodisulfide reductase subunit B.	Putative pit accessory protein.	0.510
CFPG_239	CFPG_237	CFPG_239	CFPG_237	Heterodisulfide reductase subunit B.	Inorganic phosphate transporter.	0.686
CFPG_239	CFPG_238	CFPG_239	CFPG_238	Heterodisulfide reductase subunit B.	Heterodisulfide reductase subunit C.	0.999