Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CFPG_243Putative hydrogenase beta subunit. (335 aa)    
Predicted Functional Partners:
CFPG_169
Putative hydrogenase gamma subunit.
  
 0.974
CFPG_242
Putative hydrogenase 4Fe-4S binding subunit.
 
     0.928
CFPG_241
Heterodisulfide reductase subunit MvhD.
 
   
 0.825
CFPG_240
Heterodisulfide reductase subunit A.
 
   
 0.604
CFPG_448
Putative pyruvate-flavodoxin oxidoreductase.
     
 0.554
CFPG_239
Heterodisulfide reductase subunit B.
 
 
 
 0.478
CFPG_278
Hydroxymethylbilane synthase/uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase.
     
 0.477
CFPG_344
Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.409
Your Current Organism:
Azobacteroides pseudotrichonymphae
NCBI taxonomy Id: 511995
Other names: C. Azobacteroides pseudotrichonymphae genomovar. CFP2, Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2
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