Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CFPG_256Conserved hypothetical protein. (355 aa)    
Predicted Functional Partners:
CFPG_255
DNA polymerase III delta' subunit.
  
   0.802
CFPG_254
Methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
       0.778
CFPG_257
Conserved hypothetical protein.
 
     0.761
rny
Conserved hypothetical protein; Endoribonuclease that initiates mRNA decay.
 
    0.694
CFPG_258
Iron-containing alcohol dehydrogenase.
       0.600
CFPG_253
Branched-chain amino acid aminotransferase.
       0.510
CFPG_252
Ribose-phosphate pyrophosphokinase.
       0.453
Your Current Organism:
Azobacteroides pseudotrichonymphae
NCBI taxonomy Id: 511995
Other names: C. Azobacteroides pseudotrichonymphae genomovar. CFP2, Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2
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