Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CFPG_306Conserved hypothetical protein. (88 aa)    
Predicted Functional Partners:
CFPG_147
Conserved hypothetical protein.
  
     0.744
CFPG_508
Conserved hypothetical protein.
  
     0.726
CFPG_162
Conserved hypothetical protein.
 
    0.671
CFPG_188
uroporphyrinogen-III synthase.
  
     0.664
CFPG_250
Conserved hypothetical protein.
  
     0.609
CFPG_170
4-hydroxythreonine-4-phosphate dehydrogenase.
  
     0.574
CFPG_292
Conserved hypothetical protein.
  
     0.572
CFPG_375
Conserved hypothetical protein.
  
     0.561
CFPG_214
Putative cell division protein FtsQ.
  
     0.550
CFPG_305
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate.
       0.517
Your Current Organism:
Azobacteroides pseudotrichonymphae
NCBI taxonomy Id: 511995
Other names: C. Azobacteroides pseudotrichonymphae genomovar. CFP2, Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2
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