Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CFPG_481Conserved hypothetical protein. (182 aa)    
Predicted Functional Partners:
CFPG_430
Conserved hypothetical protein.
  
     0.772
CFPG_653
Conserved hypothetical protein.
 
     0.759
CFPG_257
Conserved hypothetical protein.
  
     0.743
CFPG_508
Conserved hypothetical protein.
  
     0.736
lspA
Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
  
     0.705
CFPG_201
Conserved hypothetical protein.
  
     0.637
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.623
CFPG_475
Conserved hypothetical protein.
  
     0.601
CFPG_356
Aspartate aminotransferase.
  
     0.577
CFPG_576
Conserved hypothetical protein.
  
     0.556
Your Current Organism:
Azobacteroides pseudotrichonymphae
NCBI taxonomy Id: 511995
Other names: C. Azobacteroides pseudotrichonymphae genomovar. CFP2, Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2
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