Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CFPG_492 | CFPG_493 | CFPG_492 | CFPG_493 | Geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family. | Putative deoxyribonuclease. | 0.534 |
CFPG_493 | CFPG_492 | CFPG_493 | CFPG_492 | Putative deoxyribonuclease. | Geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family. | 0.534 |
CFPG_493 | metG | CFPG_493 | CFPG_100 | Putative deoxyribonuclease. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.591 |
CFPG_493 | mltG | CFPG_493 | CFPG_345 | Putative deoxyribonuclease. | Putative 4-amino-4-deoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.482 |
CFPG_493 | secF | CFPG_493 | CFPG_149 | Putative deoxyribonuclease. | Preprotein translocase SecD/SecF subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.456 |
metG | CFPG_493 | CFPG_100 | CFPG_493 | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | Putative deoxyribonuclease. | 0.591 |
mltG | CFPG_493 | CFPG_345 | CFPG_493 | Putative 4-amino-4-deoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | Putative deoxyribonuclease. | 0.482 |
secF | CFPG_493 | CFPG_149 | CFPG_493 | Preprotein translocase SecD/SecF subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | Putative deoxyribonuclease. | 0.456 |