Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CFPG_574OmpH-like outer membrane protein. (188 aa)    
Predicted Functional Partners:
CFPG_573
Outer membrane protein assembly factor YaeT.
 
  
 0.782
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.723
CFPG_319
Putative peptidyl-prolyl cis-trans isomerase.
  
  
 0.711
CFPG_114
Conserved hypothetical protein.
  
     0.700
CFPG_146
Conserved hypothetical protein.
 
   
 0.696
CFPG_214
Putative cell division protein FtsQ.
  
    0.694
CFPG_375
Conserved hypothetical protein.
  
     0.647
CFPG_554
Conserved hypothetical protein.
  
     0.644
CFPG_162
Conserved hypothetical protein.
  
     0.638
fabZ
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/3R-hydroxymyristoyl ACP dehydrase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis.
 
    0.620
Your Current Organism:
Azobacteroides pseudotrichonymphae
NCBI taxonomy Id: 511995
Other names: C. Azobacteroides pseudotrichonymphae genomovar. CFP2, Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2
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