STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_00240Tripartite ATP-independent periplasmic transporter dctq component; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component. (211 aa)    
Predicted Functional Partners:
KYG_00235
TRAP dicarboxylate transporter subunit DctM; COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
 
 
 0.995
KYG_12419
Hypothetical protein; COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
 
  
 0.822
KYG_00225
TRAP dicarboxylate transporter subunit DctP; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.791
KYG_00230
Family 7 extracellular solute-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.791
KYG_12429
Family 7 extracellular solute-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.784
KYG_00245
Transcriptional regulator of molybdate metabolism, LysR family protein; COG2005 N-terminal domain of molybdenum-binding protein.
       0.461
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.