STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_01032TonB-dependent receptor; COG0457 FOG: TPR repeat. (1190 aa)    
Predicted Functional Partners:
KYG_01037
Adenylate/guanylate cyclase with Chase sensor; COG4252 Predicted transmembrane sensor domain.
 
  
  0.961
KYG_19551
Sensor histidine kinase/response regulator; COG0642 Signal transduction histidine kinase.
  
 
 0.833
KYG_05519
Adenylate/guanylate cyclase with chase sensor; COG4252 Predicted transmembrane sensor domain.
 
  
  0.776
KYG_06629
Hypothetical protein; COG3128 Uncharacterized iron-regulated protein.
  
  
 0.764
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.755
KYG_07301
COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain).
 
 
  0.736
KYG_02487
Family 2 glycosyl transferase; COG0500 SAM-dependent methyltransferases.
  
  
 0.682
KYG_11619
Type 12 methyltransferase; COG0457 FOG: TPR repeat.
 
 
 0.649
KYG_21199
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase; COG2202 FOG: PAS/PAC domain.
  
  
 0.600
KYG_05504
Serine/threonine protein kinase, bacterial; COG4252 Predicted transmembrane sensor domain.
    
  0.598
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.