STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_01067COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases. (318 aa)    
Predicted Functional Partners:
KYG_01087
Hypothetical protein; COG0684 Demethylmenaquinone methyltransferase.
 
  
  0.783
KYG_01097
2-pyrone-4,6-dicarboxylic acid hydrolase; COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
     0.777
KYG_01062
TctC; COG3181 Uncharacterized protein conserved in bacteria.
       0.773
KYG_01102
Protocatechuate 4,5-dioxygenase.
 
     0.773
KYG_01082
COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
     0.764
KYG_11165
COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit.
    
  0.735
KYG_11170
COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit.
    
  0.735
KYG_01107
Oxidoreductase domain-containing protein; COG0673 Predicted dehydrogenases and related proteins.
 
     0.725
KYG_01352
COG1012 NAD-dependent aldehyde dehydrogenases.
  
 
 0.689
KYG_15940
COG1012 NAD-dependent aldehyde dehydrogenases.
  
 
 0.689
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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