STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_02157Integrase family protein; COG0582 Integrase; overlaps another CDS with the same product name. (333 aa)    
Predicted Functional Partners:
KYG_02162
Integrase family protein; COG0582 Integrase; overlaps another CDS with the same product name.
     0.965
KYG_02152
Integrase family protein; COG0582 Integrase; overlaps another CDS with the same product name; Belongs to the 'phage' integrase family.
 
     0.948
KYG_03905
Integrase/recombinase; COG0582 Integrase; overlaps another CDS with the same product name; Belongs to the 'phage' integrase family.
  
     0.767
KYG_03915
Integrase family protein; COG0582 Integrase; overlaps another CDS with the same product name; Belongs to the 'phage' integrase family.
  
     0.738
xerC
Phage integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
 
 
 
 0.657
KYG_11165
COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit.
    
  0.636
KYG_11170
COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit.
    
  0.636
KYG_10190
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
     0.573
KYG_02192
Putative phage integrase; COG4974 Site-specific recombinase XerD.
  
     0.521
KYG_07540
Hypothetical protein.
  
     0.506
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.