STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_02527Regulatory protein TetR; COG1309 Transcriptional regulator. (246 aa)    
Predicted Functional Partners:
KYG_02532
COG1960 Acyl-CoA dehydrogenases.
       0.810
KYG_02537
COG4731 Uncharacterized protein conserved in bacteria.
 
     0.694
KYG_01367
Barstar (barnase inhibitor).
  
     0.621
KYG_02542
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 
   
 0.558
KYG_10755
Hypothetical protein; COG2378 Predicted transcriptional regulator.
  
     0.511
KYG_22960
GCN5-like N-acetyltransferase; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
  
     0.496
slmA
Division inhibitor protein; COG1309 Transcriptional regulator.
       0.480
KYG_03651
Hypothetical protein.
  
     0.475
KYG_16962
Hypothetical protein.
  
     0.473
KYG_23030
COG1309 Transcriptional regulator.
  
     0.449
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.