STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_02842Hypothetical protein; COG0457 FOG: TPR repeat. (361 aa)    
Predicted Functional Partners:
KYG_02837
ErfK/YbiS/YcfS/YnhG; COG3034 Uncharacterized protein conserved in bacteria.
 
     0.909
KYG_02487
Family 2 glycosyl transferase; COG0500 SAM-dependent methyltransferases.
  
 
 0.825
KYG_05524
3',5'-cyclic-nucleotide phosphodiesterase; COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing.
  
 
   0.746
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.706
KYG_19551
Sensor histidine kinase/response regulator; COG0642 Signal transduction histidine kinase.
    
 0.690
KYG_11649
PAS/PAC sensor-containing diguanylate cyclase; COG2199 FOG: GGDEF domain.
     
 0.649
KYG_17537
Hypothetical protein.
   
   0.633
lpxH
UDP-2,3-diacylglucosamine hydrolase; Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
       0.631
KYG_02832
Cyclophilin type peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
    0.631
KYG_02817
COG3228 Uncharacterized protein conserved in bacteria; Belongs to the MtfA family.
       0.619
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.