STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_03801COG0659 Sulfate permease and related transporters (MFS superfamily). (492 aa)    
Predicted Functional Partners:
KYG_03796
COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
    0.969
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
   0.829
KYG_12394
Cytochrome b/b6 domain-containing protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
   0.792
KYG_05409
COG2365 Protein tyrosine/serine phosphatase.
    
   0.767
KYG_12624
COG0067 Glutamate synthase domain 1.
    
  0.724
KYG_18541
COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M).
  
 
 0.702
KYG_23510
COG0659 Sulfate permease and related transporters (MFS superfamily).
  
  
  0.668
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.637
KYG_06549
COG4230 Delta 1-pyrroline-5-carboxylate dehydrogenase.
  
 
  0.613
KYG_06554
COG0506 Proline dehydrogenase.
  
 
  0.613
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.