Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KYG_03054 | KYG_04195 | KYG_03054 | KYG_04195 | COG0210 Superfamily I DNA and RNA helicases. | RepB/MobA-like protein. | 0.604 |
KYG_03054 | KYG_09235 | KYG_03054 | KYG_09235 | COG0210 Superfamily I DNA and RNA helicases. | COG0514 Superfamily II DNA helicase. | 0.955 |
KYG_03054 | KYG_10090 | KYG_03054 | KYG_10090 | COG0210 Superfamily I DNA and RNA helicases. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.942 |
KYG_03054 | KYG_11619 | KYG_03054 | KYG_11619 | COG0210 Superfamily I DNA and RNA helicases. | Type 12 methyltransferase; COG0457 FOG: TPR repeat. | 0.580 |
KYG_03054 | KYG_20735 | KYG_03054 | KYG_20735 | COG0210 Superfamily I DNA and RNA helicases. | UvrD/REP helicase; COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains). | 0.556 |
KYG_03054 | polA | KYG_03054 | KYG_02959 | COG0210 Superfamily I DNA and RNA helicases. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.822 |
KYG_03054 | recA | KYG_03054 | KYG_05479 | COG0210 Superfamily I DNA and RNA helicases. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.942 |
KYG_04195 | KYG_03054 | KYG_04195 | KYG_03054 | RepB/MobA-like protein. | COG0210 Superfamily I DNA and RNA helicases. | 0.604 |
KYG_04195 | KYG_09235 | KYG_04195 | KYG_09235 | RepB/MobA-like protein. | COG0514 Superfamily II DNA helicase. | 0.797 |
KYG_04195 | KYG_10090 | KYG_04195 | KYG_10090 | RepB/MobA-like protein. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.904 |
KYG_04195 | KYG_11619 | KYG_04195 | KYG_11619 | RepB/MobA-like protein. | Type 12 methyltransferase; COG0457 FOG: TPR repeat. | 0.593 |
KYG_04195 | KYG_18271 | KYG_04195 | KYG_18271 | RepB/MobA-like protein. | Hypothetical protein. | 0.772 |
KYG_04195 | KYG_20735 | KYG_04195 | KYG_20735 | RepB/MobA-like protein. | UvrD/REP helicase; COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains). | 0.950 |
KYG_04195 | polA | KYG_04195 | KYG_02959 | RepB/MobA-like protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.561 |
KYG_04195 | recA | KYG_04195 | KYG_05479 | RepB/MobA-like protein. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.573 |
KYG_04195 | rep | KYG_04195 | KYG_03950 | RepB/MobA-like protein. | UvrD/REP helicase; Rep helicase is a single-stranded DNA-dependent ATPase involved in DNA replication; it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction. | 0.604 |
KYG_04195 | truB | KYG_04195 | KYG_06494 | RepB/MobA-like protein. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.762 |
KYG_09235 | KYG_03054 | KYG_09235 | KYG_03054 | COG0514 Superfamily II DNA helicase. | COG0210 Superfamily I DNA and RNA helicases. | 0.955 |
KYG_09235 | KYG_04195 | KYG_09235 | KYG_04195 | COG0514 Superfamily II DNA helicase. | RepB/MobA-like protein. | 0.797 |
KYG_09235 | KYG_10090 | KYG_09235 | KYG_10090 | COG0514 Superfamily II DNA helicase. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.942 |
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