STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_04415Hypothetical protein. (138 aa)    
Predicted Functional Partners:
KYG_04410
DNA polymerase subunit beta; COG1708 Predicted nucleotidyltransferases.
 
     0.964
KYG_02737
Hypothetical protein; COG0640 Predicted transcriptional regulators.
   
 
 0.918
KYG_04420
Binding-protein-dependent transport systems inner membrane component; COG4239 ABC-type uncharacterized transport system, permease component.
       0.783
KYG_04405
Binding-protein-dependent transport systems inner membrane component; COG4174 ABC-type uncharacterized transport system, permease component.
       0.777
KYG_04425
ABC transporter related protein; COG4172 ABC-type uncharacterized transport system, duplicated ATPase component; Belongs to the ABC transporter superfamily.
       0.707
KYG_04400
Extracellular solute-binding protein; COG4166 ABC-type oligopeptide transport system, periplasmic component.
       0.506
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.