STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_04450Polyhydroxyalkonate synthesis repressor, PhaR; COG5394 Uncharacterized protein conserved in bacteria. (186 aa)    
Predicted Functional Partners:
KYG_07910
poly(R)-hydroxyalkanoic acid synthase, class I; COG3243 Poly(3-hydroxyalkanoate) synthetase.
 
   
 0.810
KYG_14228
Poly-beta-hydroxybutyrate polymerase domain protein; COG3243 Poly(3-hydroxyalkanoate) synthetase.
 
   
 0.776
KYG_20088
Phasin family protein.
 
   
 0.682
KYG_07975
COG4553 Poly-beta-hydroxyalkanoate depolymerase.
 
   
 0.580
rimO
Ribosomal protein S12 methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
       0.550
KYG_04445
Mechanosensitive ion channel protein MscS; COG0668 Small-conductance mechanosensitive channel.
       0.510
KYG_10840
COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.
     
 0.416
KYG_12464
Patatin; COG1752 Predicted esterase of the alpha-beta hydrolase superfamily.
 
     0.411
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.