STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_05534Pilin; COG4969 Tfp pilus assembly protein, major pilin PilA; Belongs to the N-Me-Phe pilin family. (176 aa)    
Predicted Functional Partners:
KYG_14613
Hypothetical protein.
  
 0.872
KYG_12659
Type IV pilus secretin PilQ; COG4796 Type II secretory pathway, component HofQ.
 
   
 0.732
KYG_02422
General secretory pathway protein K.
  
 
 0.692
KYG_14608
General secretion pathway protein K; COG3156 Type II secretory pathway, component PulK.
  
 
 0.692
KYG_12324
Type II secretion system protein; COG1459 Type II secretory pathway, component PulF.
 
  
 0.686
KYG_12319
COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
 0.668
KYG_12679
COG4972 Tfp pilus assembly protein, ATPase PilM.
 
  
 0.649
KYG_12329
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.642
KYG_12669
COG3167 Tfp pilus assembly protein PilO.
 
  
 0.607
KYG_02392
COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
  
 0.596
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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