STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_06214Sigma E regulatory protein, MucB/RseB; COG3026 Negative regulator of sigma E activity. (293 aa)    
Predicted Functional Partners:
KYG_06219
Anti sigma-E protein RseA family protein; COG3073 Negative regulator of sigma E activity.
 
 
 0.996
KYG_06224
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.774
KYG_06209
Protease Do; COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.
  
  
 0.653
KYG_20785
Type 11 methyltransferase; COG0500 SAM-dependent methyltransferases.
  
     0.601
KYG_20495
Putative membrane-associated zinc metalloprotease; COG0750 Predicted membrane-associated Zn-dependent proteases 1.
  
  
 0.590
KYG_04025
YiaAB two helix domain-containing protein; COG4298 Uncharacterized protein conserved in bacteria.
  
     0.513
KYG_21931
Hypothetical protein.
  
     0.467
KYG_08025
Hypothetical protein.
  
     0.459
KYG_21921
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.453
KYG_08125
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.446
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.