STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_06339COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. (267 aa)    
Predicted Functional Partners:
paaA
phenylacetate-CoA oxygenase subunit PaaA.
 
 
 0.970
KYG_10885
PAS/PAC sensor hybrid histidine kinase; COG0642 Signal transduction histidine kinase.
    
 0.938
KYG_22146
Multi-sensor hybrid histidine kinase; COG2202 FOG: PAS/PAC domain.
    
 0.938
KYG_19551
Sensor histidine kinase/response regulator; COG0642 Signal transduction histidine kinase.
    
 0.936
KYG_06309
phenylacetate-CoA oxygenase subunit PaaJ; COG2151 Predicted metal-sulfur cluster biosynthetic enzyme.
 
 
 0.931
KYG_06314
phenylacetate-CoA oxygenase subunit PaaI.
 
 
 0.927
paaB
phenylacetate-CoA oxygenase subunit PaaB; COG3460 Uncharacterized enzyme of phenylacetate metabolism.
 
 
 0.902
KYG_13026
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 0.881
KYG_02107
COG0642 Signal transduction histidine kinase.
    
  0.863
KYG_11819
Integral membrane sensor hybrid histidine kinase; COG0642 Signal transduction histidine kinase.
    
  0.863
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.