STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_07061COG3504 Type IV secretory pathway, VirB9 components. (304 aa)    
Predicted Functional Partners:
KYG_07056
COG2948 Type IV secretory pathway, VirB10 components.
 
 0.998
KYG_07066
COG3736 Type IV secretory pathway, component VirB8.
 
  
 0.989
KYG_15465
Conjugation trbi family protein; COG2948 Type IV secretory pathway, VirB10 components.
 
 0.988
KYG_07051
Type IV secretory pathway, VirB11 component; Part of the Type IV secretion system. Belongs to the GSP E family.
 
  
 0.985
KYG_07086
Type IV secretion/conjugal transfer ATPase; COG3451 Type IV secretory pathway, VirB4 components.
 
 
 0.977
KYG_07076
TrbL/VirB6 plasmid conjugal transfer protein; COG3704 Type IV secretory pathway, VirB6 components.
 
 0.975
KYG_07046
TRAG family protein; COG3505 Type IV secretory pathway, VirD4 components.
 
   
 0.946
KYG_07071
Type IV secretion system family protein.
 
  
 0.886
KYG_07096
Conjugal transfer protein TrbC.
  
  
 0.876
KYG_07091
COG3702 Type IV secretory pathway, VirB3 components.
  
  
 0.875
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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