Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
KYG_05754 | KYG_07181 | DNA protecting protein DprA; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake. | COG4469 Competence protein. | 0.482 |
KYG_05754 | KYG_12329 | DNA protecting protein DprA; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake. | Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | 0.837 |
KYG_05754 | KYG_14823 | DNA protecting protein DprA; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake. | COG1555 DNA uptake protein and related DNA-binding proteins. | 0.420 |
KYG_05754 | KYG_16722 | DNA protecting protein DprA; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake. | DNA internalization-related competence protein ComEC/Rec2; COG0658 Predicted membrane metal-binding protein. | 0.897 |
KYG_07181 | KYG_05754 | COG4469 Competence protein. | DNA protecting protein DprA; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake. | 0.482 |
KYG_07181 | KYG_07186 | COG4469 Competence protein. | Hypothetical protein. | 0.773 |
KYG_07181 | KYG_07191 | COG4469 Competence protein. | Hypothetical protein. | 0.566 |
KYG_07181 | KYG_12329 | COG4469 Competence protein. | Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | 0.684 |
KYG_07181 | KYG_14823 | COG4469 Competence protein. | COG1555 DNA uptake protein and related DNA-binding proteins. | 0.565 |
KYG_07181 | KYG_16722 | COG4469 Competence protein. | DNA internalization-related competence protein ComEC/Rec2; COG0658 Predicted membrane metal-binding protein. | 0.454 |
KYG_07186 | KYG_07181 | Hypothetical protein. | COG4469 Competence protein. | 0.773 |
KYG_07186 | KYG_07191 | Hypothetical protein. | Hypothetical protein. | 0.566 |
KYG_07191 | KYG_07181 | Hypothetical protein. | COG4469 Competence protein. | 0.566 |
KYG_07191 | KYG_07186 | Hypothetical protein. | Hypothetical protein. | 0.566 |
KYG_12329 | KYG_05754 | Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | DNA protecting protein DprA; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake. | 0.837 |
KYG_12329 | KYG_07181 | Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | COG4469 Competence protein. | 0.684 |
KYG_12329 | KYG_14823 | Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | COG1555 DNA uptake protein and related DNA-binding proteins. | 0.810 |
KYG_12329 | KYG_16722 | Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | DNA internalization-related competence protein ComEC/Rec2; COG0658 Predicted membrane metal-binding protein. | 0.862 |
KYG_14823 | KYG_05754 | COG1555 DNA uptake protein and related DNA-binding proteins. | DNA protecting protein DprA; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake. | 0.420 |
KYG_14823 | KYG_07181 | COG1555 DNA uptake protein and related DNA-binding proteins. | COG4469 Competence protein. | 0.565 |
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