STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_07545COG3544 Uncharacterized protein conserved in bacteria. (119 aa)    
Predicted Functional Partners:
KYG_07540
Hypothetical protein.
 
   
 0.913
KYG_07535
COG5662 Predicted transmembrane transcriptional regulator (anti-sigma factor).
 
   
 0.676
KYG_07550
ECF subfamily RNA polymerase sigma-24 factor; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
     
 0.618
KYG_07555
Hypothetical protein.
       0.593
KYG_07565
Hypothetical protein; COG2010 Cytochrome c, mono- and diheme variants.
 
     0.538
KYG_07560
Oxidoreductase, molybdopterin-binding protein; COG2041 Sulfite oxidase and related enzymes.
 
     0.503
KYG_01867
COG0477 Permeases of the major facilitator superfamily.
  
     0.487
KYG_11280
COG0477 Permeases of the major facilitator superfamily.
  
     0.452
KYG_02192
Putative phage integrase; COG4974 Site-specific recombinase XerD.
  
     0.416
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.