STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_07750Sel1 domain-containing protein repeat-containing protein; COG0790 FOG: TPR repeat, SEL1 subfamily. (407 aa)    
Predicted Functional Partners:
KYG_00837
COG0464 ATPases of the AAA+ class.
   
 0.916
KYG_07755
Hypothetical protein.
  
    0.849
KYG_08605
COG1558 Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
   
   0.747
KYG_07760
Hypothetical protein.
       0.704
KYG_06549
COG4230 Delta 1-pyrroline-5-carboxylate dehydrogenase.
    
  0.671
KYG_06554
COG0506 Proline dehydrogenase.
    
  0.671
mnmG
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
   
   0.600
KYG_10885
PAS/PAC sensor hybrid histidine kinase; COG0642 Signal transduction histidine kinase.
   
 0.517
KYG_22146
Multi-sensor hybrid histidine kinase; COG2202 FOG: PAS/PAC domain.
   
 0.517
KYG_19551
Sensor histidine kinase/response regulator; COG0642 Signal transduction histidine kinase.
   
 0.495
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.