Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
KYG_00520 | KYG_07925 | PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase; COG2199 FOG: GGDEF domain. | Diguanylate phosphodiesterase; COG2200 FOG: EAL domain. | 0.831 |
KYG_00520 | KYG_08085 | PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase; COG2199 FOG: GGDEF domain. | Diguanylate cyclase/phosphodiesterase; COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain. | 0.978 |
KYG_00520 | KYG_08290 | PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase; COG2199 FOG: GGDEF domain. | Diguanylate cyclase; COG2199 FOG: GGDEF domain. | 0.769 |
KYG_00520 | KYG_10885 | PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase; COG2199 FOG: GGDEF domain. | PAS/PAC sensor hybrid histidine kinase; COG0642 Signal transduction histidine kinase. | 0.990 |
KYG_00520 | KYG_15545 | PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase; COG2199 FOG: GGDEF domain. | Diguanylate cyclase/phosphodiesterase; COG2200 FOG: EAL domain. | 0.850 |
KYG_00520 | KYG_16005 | PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase; COG2199 FOG: GGDEF domain. | COG2202 FOG: PAS/PAC domain. | 0.990 |
KYG_00520 | KYG_19551 | PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase; COG2199 FOG: GGDEF domain. | Sensor histidine kinase/response regulator; COG0642 Signal transduction histidine kinase. | 0.992 |
KYG_00520 | KYG_21886 | PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase; COG2199 FOG: GGDEF domain. | PAS/PAC sensor-containing diguanylate cyclase; COG2202 FOG: PAS/PAC domain. | 0.953 |
KYG_00520 | KYG_22146 | PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase; COG2199 FOG: GGDEF domain. | Multi-sensor hybrid histidine kinase; COG2202 FOG: PAS/PAC domain. | 0.989 |
KYG_00520 | KYG_23055 | PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase; COG2199 FOG: GGDEF domain. | PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase; COG2200 FOG: EAL domain. | 0.982 |
KYG_07925 | KYG_00520 | Diguanylate phosphodiesterase; COG2200 FOG: EAL domain. | PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase; COG2199 FOG: GGDEF domain. | 0.831 |
KYG_07925 | KYG_08085 | Diguanylate phosphodiesterase; COG2200 FOG: EAL domain. | Diguanylate cyclase/phosphodiesterase; COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain. | 0.877 |
KYG_07925 | KYG_08290 | Diguanylate phosphodiesterase; COG2200 FOG: EAL domain. | Diguanylate cyclase; COG2199 FOG: GGDEF domain. | 0.844 |
KYG_07925 | KYG_10885 | Diguanylate phosphodiesterase; COG2200 FOG: EAL domain. | PAS/PAC sensor hybrid histidine kinase; COG0642 Signal transduction histidine kinase. | 0.851 |
KYG_07925 | KYG_15545 | Diguanylate phosphodiesterase; COG2200 FOG: EAL domain. | Diguanylate cyclase/phosphodiesterase; COG2200 FOG: EAL domain. | 0.835 |
KYG_07925 | KYG_16005 | Diguanylate phosphodiesterase; COG2200 FOG: EAL domain. | COG2202 FOG: PAS/PAC domain. | 0.846 |
KYG_07925 | KYG_19551 | Diguanylate phosphodiesterase; COG2200 FOG: EAL domain. | Sensor histidine kinase/response regulator; COG0642 Signal transduction histidine kinase. | 0.852 |
KYG_07925 | KYG_21886 | Diguanylate phosphodiesterase; COG2200 FOG: EAL domain. | PAS/PAC sensor-containing diguanylate cyclase; COG2202 FOG: PAS/PAC domain. | 0.910 |
KYG_07925 | KYG_22146 | Diguanylate phosphodiesterase; COG2200 FOG: EAL domain. | Multi-sensor hybrid histidine kinase; COG2202 FOG: PAS/PAC domain. | 0.851 |
KYG_07925 | KYG_23055 | Diguanylate phosphodiesterase; COG2200 FOG: EAL domain. | PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase; COG2200 FOG: EAL domain. | 0.892 |
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