STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_07975COG4553 Poly-beta-hydroxyalkanoate depolymerase. (539 aa)    
Predicted Functional Partners:
KYG_07910
poly(R)-hydroxyalkanoic acid synthase, class I; COG3243 Poly(3-hydroxyalkanoate) synthetase.
 
  
 0.970
KYG_14228
Poly-beta-hydroxybutyrate polymerase domain protein; COG3243 Poly(3-hydroxyalkanoate) synthetase.
 
  
 0.936
KYG_07970
RnfABCDGE type electron transport complex subunit B; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.
       0.822
KYG_14373
D-(-)-3-hydroxybutyrate oligomer hydrolase; Participates in the degradation of poly-3-hydroxybutyrate (PHB). It works downstream of poly(3-hydroxybutyrate) depolymerase, hydrolyzing D(-)-3-hydroxybutyrate oligomers of various length (3HB- oligomers) into 3HB-monomers; Belongs to the D-(-)-3-hydroxybutyrate oligomer hydrolase family.
  
  
  0.777
KYG_04000
D-(-)-3-hydroxybutyrate oligomer hydrolase.
  
  
  0.774
KYG_04450
Polyhydroxyalkonate synthesis repressor, PhaR; COG5394 Uncharacterized protein conserved in bacteria.
 
   
 0.580
KYG_17337
COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
   
 0.503
KYG_07980
RelA/SpoT domain-containing protein; COG2357 Uncharacterized protein conserved in bacteria.
       0.487
clpX
ATP-dependent protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
   
    0.453
KYG_17282
Hypothetical protein.
  
     0.418
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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