STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_08525TDP-4-oxo-6-deoxy-D-glucose transaminase; COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family. (393 aa)    
Predicted Functional Partners:
KYG_02372
WxcM domain-containing protein; COG0110 Acetyltransferase (isoleucine patch superfamily).
 
 0.978
KYG_06109
Polysaccharide biosynthesis protein CapD; COG1086 Predicted nucleoside-diphosphate sugar epimerases.
 
 
 0.920
KYG_08500
Hypothetical protein.
 
  
 0.895
KYG_00025
COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.
  
 
 0.829
KYG_08505
SAM-binding motif-containing protein; COG0500 SAM-dependent methyltransferases.
 
   
 0.810
KYG_08515
Hypothetical protein.
 
     0.793
KYG_02487
Family 2 glycosyl transferase; COG0500 SAM-dependent methyltransferases.
  
 
 0.791
KYG_01107
Oxidoreductase domain-containing protein; COG0673 Predicted dehydrogenases and related proteins.
  
 
 0.787
KYG_08520
FAD dependent oxidoreductase; COG0665 Glycine/D-amino acid oxidases (deaminating).
       0.776
KYG_23045
COG1088 dTDP-D-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 
 0.747
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.