STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_09550COG3117 Uncharacterized protein conserved in bacteria. (208 aa)    
Predicted Functional Partners:
lptA
Lipopolysaccharide transport periplasmic protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane.
 
 
 0.995
KYG_19871
Sulfate-transporting ATPase; COG1137 ABC-type (unclassified) transport system, ATPase component.
  
 
 0.984
KYG_10780
Permease; COG0795 Predicted permeases; overlaps another CDS with the same product name.
 
 
 0.970
KYG_10785
Permease; COG0795 Predicted permeases; overlaps another CDS with the same product name.
 
 
 0.966
KYG_09555
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; COG1778 Low specificity phosphatase (HAD superfamily).
  
  
 0.882
KYG_09545
Short chain dehydrogenase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.831
KYG_02984
Hypothetical protein.
  
     0.745
KYG_12164
COG3165 Uncharacterized protein conserved in bacteria.
  
     0.742
KYG_00145
HemY domain-containing protein; COG3071 Uncharacterized enzyme of heme biosynthesis.
  
     0.736
KYG_01977
Hypothetical protein.
  
     0.729
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.