STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sbcBCOG2925 Exonuclease I. (481 aa)    
Predicted Functional Partners:
KYG_05844
Single-strand-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
    
 
 0.797
KYG_06966
COG0629 Single-stranded DNA-binding protein.
    
 
 0.797
KYG_06704
Hypothetical protein; COG0629 Single-stranded DNA-binding protein.
    
 
 0.727
KYG_23275
single-stranded-DNA-specific exonuclease RecJ; COG0608 Single-stranded DNA-specific exonuclease.
    
 
 0.722
rnhA
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
   
 
 0.509
KYG_10580
COG2951 Membrane-bound lytic murein transglycosylase B.
       0.504
KYG_12664
COG3168 Tfp pilus assembly protein PilP.
  
     0.504
KYG_09955
Ribonuclease H.
   
 
 0.435
KYG_04519
Putative signal peptide protein.
 
     0.432
KYG_18426
PilC domain-containing protein; COG3419 Tfp pilus assembly protein, tip-associated adhesin PilY1.
  
     0.418
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.