STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_11200Thioredoxin-related protein; COG0526 Thiol-disulfide isomerase and thioredoxins. (150 aa)    
Predicted Functional Partners:
KYG_11195
Hypothetical protein.
 
  
 0.834
KYG_07391
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; COG0492 Thioredoxin reductase.
  
 0.815
KYG_11559
COG0492 Thioredoxin reductase.
  
 0.815
KYG_11210
Glutaredoxin; COG0526 Thiol-disulfide isomerase and thioredoxins.
 
   
 0.811
KYG_11205
Putative transferase/hydrolase; COG0607 Rhodanese-related sulfurtransferase.
     
 0.778
KYG_06549
COG4230 Delta 1-pyrroline-5-carboxylate dehydrogenase.
    
 
 0.770
KYG_06554
COG0506 Proline dehydrogenase.
    
 
 0.770
KYG_11215
Hypothetical protein.
       0.746
fusA
Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.
    
 
 0.730
KYG_12624
COG0067 Glutamate synthase domain 1.
   
 
 0.689
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.