STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_11689COG0726 Predicted xylanase/chitin deacetylase. (324 aa)    
Predicted Functional Partners:
KYG_11679
Hydroxyisourate hydrolase; COG2351 Transthyretin-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
 
  0.963
KYG_11694
Putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; COG3195 Uncharacterized protein conserved in bacteria.
  
 0.958
KYG_08270
Carbohydrate binding protein; COG3459 Cellobiose phosphorylase.
  
 
 0.892
KYG_11684
COG1802 Transcriptional regulators.
 
     0.868
KYG_11664
COG3748 Predicted membrane protein.
 
    0.811
KYG_11699
COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.
 
  
  0.801
KYG_23475
Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.
 
   
 0.785
KYG_23420
COG4631 Xanthine dehydrogenase, molybdopterin-binding subunit B.
 
     0.763
KYG_11669
COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family.
 
     0.731
KYG_23425
COG4630 Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A.
 
     0.730
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.