Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KYG_12124 | KYG_12129 | KYG_12124 | KYG_12129 | Endonuclease/exonuclease/phosphatase; COG3568 Metal-dependent hydrolase. | NUDIX hydrolase; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes. | 0.680 |
KYG_12124 | KYG_12134 | KYG_12124 | KYG_12134 | Endonuclease/exonuclease/phosphatase; COG3568 Metal-dependent hydrolase. | Hypothetical protein. | 0.680 |
KYG_12124 | KYG_12144 | KYG_12124 | KYG_12144 | Endonuclease/exonuclease/phosphatase; COG3568 Metal-dependent hydrolase. | Hypothetical protein. | 0.405 |
KYG_12124 | KYG_12149 | KYG_12124 | KYG_12149 | Endonuclease/exonuclease/phosphatase; COG3568 Metal-dependent hydrolase. | FmdB family regulatory protein; COG2331 Uncharacterized protein conserved in bacteria. | 0.423 |
KYG_12124 | aspS | KYG_12124 | KYG_12139 | Endonuclease/exonuclease/phosphatase; COG3568 Metal-dependent hydrolase. | aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 0.512 |
KYG_12129 | KYG_12124 | KYG_12129 | KYG_12124 | NUDIX hydrolase; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes. | Endonuclease/exonuclease/phosphatase; COG3568 Metal-dependent hydrolase. | 0.680 |
KYG_12129 | KYG_12134 | KYG_12129 | KYG_12134 | NUDIX hydrolase; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes. | Hypothetical protein. | 0.849 |
KYG_12129 | KYG_12144 | KYG_12129 | KYG_12144 | NUDIX hydrolase; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes. | Hypothetical protein. | 0.508 |
KYG_12129 | KYG_12149 | KYG_12129 | KYG_12149 | NUDIX hydrolase; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes. | FmdB family regulatory protein; COG2331 Uncharacterized protein conserved in bacteria. | 0.508 |
KYG_12129 | aspS | KYG_12129 | KYG_12139 | NUDIX hydrolase; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes. | aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 0.814 |
KYG_12134 | KYG_12124 | KYG_12134 | KYG_12124 | Hypothetical protein. | Endonuclease/exonuclease/phosphatase; COG3568 Metal-dependent hydrolase. | 0.680 |
KYG_12134 | KYG_12129 | KYG_12134 | KYG_12129 | Hypothetical protein. | NUDIX hydrolase; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes. | 0.849 |
KYG_12134 | KYG_12144 | KYG_12134 | KYG_12144 | Hypothetical protein. | Hypothetical protein. | 0.528 |
KYG_12134 | KYG_12149 | KYG_12134 | KYG_12149 | Hypothetical protein. | FmdB family regulatory protein; COG2331 Uncharacterized protein conserved in bacteria. | 0.528 |
KYG_12134 | aspS | KYG_12134 | KYG_12139 | Hypothetical protein. | aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 0.653 |
KYG_12144 | KYG_12124 | KYG_12144 | KYG_12124 | Hypothetical protein. | Endonuclease/exonuclease/phosphatase; COG3568 Metal-dependent hydrolase. | 0.405 |
KYG_12144 | KYG_12129 | KYG_12144 | KYG_12129 | Hypothetical protein. | NUDIX hydrolase; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes. | 0.508 |
KYG_12144 | KYG_12134 | KYG_12144 | KYG_12134 | Hypothetical protein. | Hypothetical protein. | 0.528 |
KYG_12144 | KYG_12149 | KYG_12144 | KYG_12149 | Hypothetical protein. | FmdB family regulatory protein; COG2331 Uncharacterized protein conserved in bacteria. | 0.848 |
KYG_12144 | KYG_12154 | KYG_12144 | KYG_12154 | Hypothetical protein. | COG0591 Na+/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. | 0.735 |
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