STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_13746Lipid-transfer protein; COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (394 aa)    
Predicted Functional Partners:
KYG_02542
COG1250 3-hydroxyacyl-CoA dehydrogenase.
  
 0.988
KYG_07735
3-hydroxyacyl-CoA dehydrogenase NAD-binding; COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
 0.988
KYG_05379
3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.984
KYG_13506
Fatty oxidation complex subunit alpha; COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
 0.984
KYG_14121
Hypothetical protein; COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon.
 
 0.892
KYG_13616
Hypothetical protein; COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon.
 
 0.885
KYG_13986
Hypothetical protein; COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon.
 0.882
KYG_13026
COG1250 3-hydroxyacyl-CoA dehydrogenase.
  
 0.853
KYG_13731
COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
  0.850
KYG_13741
Hypothetical protein; COG2030 Acyl dehydratase.
 
  0.844
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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