KYG_14016 protein (Nocardioides sp. SLBN35) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KYG_14016

COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family. (685 aa)

Predicted Functional Partners:

KYG_12624

0.795

KYG_17757

0.653

KYG_13531

0.642

KYG_17217

0.642

KYG_02037

0.621

KYG_14011

0.590

KYG_14021

0.530

KYG_14026

0.521

KYG_13536

0.511

KYG_17212

0.511

Your Current Organism:

Nocardioides sp. SLBN35

NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
KYG_02037	KYG_14016	COG1140 Nitrate reductase beta subunit.	COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.	0.621
KYG_12624	KYG_14016	COG0067 Glutamate synthase domain 1.	COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.	0.795
KYG_12624	KYG_17757	COG0067 Glutamate synthase domain 1.	Fumarase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.	0.421
KYG_13531	KYG_13536	COG2086 Electron transfer flavoprotein, beta subunit.	COG2025 Electron transfer flavoprotein, alpha subunit.	0.999
KYG_13531	KYG_14016	COG2086 Electron transfer flavoprotein, beta subunit.	COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.	0.642
KYG_13531	KYG_14021	COG2086 Electron transfer flavoprotein, beta subunit.	COG1960 Acyl-CoA dehydrogenases.	0.632
KYG_13531	KYG_17212	COG2086 Electron transfer flavoprotein, beta subunit.	COG2025 Electron transfer flavoprotein, alpha subunit.	0.998
KYG_13536	KYG_13531	COG2025 Electron transfer flavoprotein, alpha subunit.	COG2086 Electron transfer flavoprotein, beta subunit.	0.999
KYG_13536	KYG_14016	COG2025 Electron transfer flavoprotein, alpha subunit.	COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.	0.511
KYG_13536	KYG_14021	COG2025 Electron transfer flavoprotein, alpha subunit.	COG1960 Acyl-CoA dehydrogenases.	0.699
KYG_13536	KYG_17217	COG2025 Electron transfer flavoprotein, alpha subunit.	COG2086 Electron transfer flavoprotein, beta subunit.	0.999
KYG_14011	KYG_14016	COG1024 Enoyl-CoA hydratase/carnithine racemase.	COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.	0.590
KYG_14011	KYG_14021	COG1024 Enoyl-CoA hydratase/carnithine racemase.	COG1960 Acyl-CoA dehydrogenases.	0.630
KYG_14011	KYG_14026	COG1024 Enoyl-CoA hydratase/carnithine racemase.	COG1024 Enoyl-CoA hydratase/carnithine racemase.	0.771
KYG_14016	KYG_02037	COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.	COG1140 Nitrate reductase beta subunit.	0.621
KYG_14016	KYG_12624	COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.	COG0067 Glutamate synthase domain 1.	0.795
KYG_14016	KYG_13531	COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.	COG2086 Electron transfer flavoprotein, beta subunit.	0.642
KYG_14016	KYG_13536	COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.	COG2025 Electron transfer flavoprotein, alpha subunit.	0.511
KYG_14016	KYG_14011	COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.	COG1024 Enoyl-CoA hydratase/carnithine racemase.	0.590
KYG_14016	KYG_14021	COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.	COG1960 Acyl-CoA dehydrogenases.	0.530