STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_14146COG0842 ABC-type multidrug transport system, permease component. (355 aa)    
Predicted Functional Partners:
KYG_14136
Secretion protein HlyD family protein; COG0845 Membrane-fusion protein.
 
  
 0.969
KYG_14141
ABC transporter-like protein; COG1131 ABC-type multidrug transport system, ATPase component.
 
 
0.923
KYG_20875
Secretion protein HlyD family protein; COG0845 Membrane-fusion protein.
 
  
 0.593
KYG_12579
ABC transporter-like protein; COG1131 ABC-type multidrug transport system, ATPase component.
 
 
 0.447
nodI
Fe(3+)-transporting ATPase; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system.
 
 
 0.447
KYG_17257
COG1131 ABC-type multidrug transport system, ATPase component.
 
 
 0.447
KYG_23535
COG1131 ABC-type multidrug transport system, ATPase component.
 
 
 0.447
KYG_00380
COG4133 ABC-type transport system involved in cytochrome c biogenesis, ATPase component.
  
 
 0.428
KYG_13811
COG0410 ABC-type branched-chain amino acid transport systems, ATPase component.
  
 
 0.428
KYG_13881
COG0410 ABC-type branched-chain amino acid transport systems, ATPase component.
  
 
 0.428
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.