STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_14663Porin; COG3203 Outer membrane protein (porin). (309 aa)    
Predicted Functional Partners:
KYG_12594
VacJ family lipoprotein; COG2853 Surface lipoprotein.
   
 
 0.874
tolB
Translocation protein TolB; COG0823 Periplasmic component of the Tol biopolymer transport system.
   
 
 0.740
KYG_16772
NlpB/DapX family lipoprotein; COG3317 Uncharacterized lipoprotein.
  
     0.688
KYG_16662
Porin; COG3203 Outer membrane protein (porin).
  
  
 
0.620
KYG_17587
COG4206 Outer membrane cobalamin receptor protein.
    
 
 0.618
KYG_08820
Porin Gram-negative type; COG3203 Outer membrane protein (porin).
  
  
 
0.610
KYG_14733
COG4580 Maltoporin (phage lambda and maltose receptor).
     
 0.564
KYG_20785
Type 11 methyltransferase; COG0500 SAM-dependent methyltransferases.
  
     0.530
KYG_03291
Hypothetical protein.
  
     0.466
KYG_06209
Protease Do; COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.
    
 
 0.466
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.