STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_14958Phytanoyl-CoA dioxygenase; COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin. (280 aa)    
Predicted Functional Partners:
KYG_14963
HutD family protein; COG3758 Uncharacterized protein conserved in bacteria.
 
     0.815
KYG_19023
Hypothetical protein; COG4341 Predicted HD phosphohydrolase.
 
  
  0.731
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
       0.653
hutH
COG2986 Histidine ammonia-lyase.
  
    0.649
KYG_22501
COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase.
 
  
 0.609
KYG_01172
Peptidase M24; COG0006 Xaa-Pro aminopeptidase; Belongs to the peptidase M24B family.
    
 0.598
hutI
COG1228 Imidazolonepropionase and related amidohydrolases.
       0.591
KYG_16912
Cupin 2 domain-containing protein; COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.
    
 0.543
KYG_21219
Cupin 2 conserved barrel domain protein; COG1396 Predicted transcriptional regulators.
    
 0.543
KYG_04769
FAD linked oxidase domain-containing protein; COG0277 FAD/FMN-containing dehydrogenases; overlaps another CDS with the same product name.
   
 0.536
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.