STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_14983COG3741 N-formylglutamate amidohydrolase. (271 aa)    
Predicted Functional Partners:
KYG_05469
COG3741 N-formylglutamate amidohydrolase.
  
  
 
0.915
hutI
COG1228 Imidazolonepropionase and related amidohydrolases.
 
  
 0.884
KYG_03746
4Fe-4S ferredoxin; COG0437 Fe-S-cluster-containing hydrogenase components 1.
    
  0.869
KYG_12624
COG0067 Glutamate synthase domain 1.
     
 0.868
KYG_14963
HutD family protein; COG3758 Uncharacterized protein conserved in bacteria.
 
    0.778
KYG_12229
COG3741 N-formylglutamate amidohydrolase.
  
  
 
0.773
KYG_06549
COG4230 Delta 1-pyrroline-5-carboxylate dehydrogenase.
     
 0.763
KYG_06554
COG0506 Proline dehydrogenase.
     
 0.763
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
  
 0.737
hutH
COG2986 Histidine ammonia-lyase.
 
  
 0.682
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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