STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG_15230COG3843 Type IV secretory pathway, VirD2 components (relaxase). (650 aa)    
Predicted Functional Partners:
KYG_15210
Regulator of plasmid copy number.
 
     0.953
KYG_15215
Hypothetical protein.
 
     0.953
KYG_15220
Plasmid conjugal transfer transmembrane protein; COG4959 Type IV secretory pathway, protease TraF.
 
     0.953
KYG_15205
Cobyrinic acid ac-diamide synthase; COG1192 ATPases involved in chromosome partitioning.
 
     0.909
KYG_15200
COG5534 Plasmid replication initiator protein.
 
     0.863
KYG_15195
Hypothetical protein.
 
     0.858
KYG_15190
Hypothetical protein.
 
    0.843
KYG_15415
Conjugal transfer coupling protein TraG; COG3505 Type IV secretory pathway, VirD4 components.
 
   
 0.819
KYG_15225
Hypothetical protein.
       0.811
KYG_15420
CopG/DNA-binding domain-containing protein.
 
     0.803
Your Current Organism:
Nocardioides sp. SLBN35
NCBI taxonomy Id: 512030
Other names: Acidovorax sp. NO1, N. sp. SLBN-35, Nocardioides sp. SLBN-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.